miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Rattus norvegicus, Peromyscus maniculatus bairdii, Peromyscus polionotus subgriseus



ABOUT THIS RECORD

ID: MNEST032458
species: Mus musculus
miRNA family: mir-1954
source: miRBase, original name: mmu-mir-1954 (MI0009949)

Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACTGCAGAGTGAGACCCTGTT

miRNA*
CGGGGTTTCTCTGTGTAGCCC

mismatches: 3
bulges: 0

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pre-miRNA
GAGGTCAGCCAGAACTGCAGAGTGAGACCCTGTTGTTTGTTTGTTTGTTTGAGACGGGGTTTCTCTGTGTAGCCCTGGCTATCCTA

dot-bracket secondary structure
.(((..((((((..(((((.((.(((((((((((..................))))))))))).)).)))))..))))))..))).


SIMILARITIES
miRBase mmu-mir-5098: 0.000000001

PMRD no hits

microPC no hits
UniProt no hits

RFAM 7SK: 0.000001

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK, Genome Res. 18:1787-1797(2008)., "In-depth characterization of the microRNA transcriptome in a leukemia progression model"




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