ABOUT THIS RECORDspecies: Mus musculus
source: miRBase, original name: mmu-mir-1960 (MI0009957)
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCAGTGCTGTTAGAAGAGGGCT miRNA* CTCTCTTCTGCAGCACTGACT mismatches: 1 bulges: 1 |
pre-miRNA
CAGAGTGAGCAGCCAGTGCTGTTAGAAGAGGGCTGAGAGCAGGGAGAGCTCTCTTCTGCAGCACTGACTTTTCCTCTG
dot-bracket secondary structure
(((((.(((.((.(((((((((.(((((((((((............)))))))))))))))))))).)).))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK, Genome Res. 18:1787-1797(2008)., "In-depth characterization of the microRNA transcriptome in a leukemia progression model"
CAGAGTGAGCAGCCAGTGCTGTTAGAAGAGGGCTGAGAGCAGGGAGAGCTCTCTTCTGCAGCACTGACTTTTCCTCTG
dot-bracket secondary structure
(((((.(((.((.(((((((((.(((((((((((............)))))))))))))))))))).)).))))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK, Genome Res. 18:1787-1797(2008)., "In-depth characterization of the microRNA transcriptome in a leukemia progression model"
