miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Danio rerio, Rattus norvegicus, Xenopus laevis, Oryzias latipes, Gallus gallus, Salmo salar, Canis lupus familiaris, Ictalurus punctatus, Ovis aries, Oncorhynchus mykiss, Gasterosteus aculeatus, Pimephales promelas, Gadus morhua, Macaca fascicularis, Anolis carolinensis, Trichosurus vulpecula, Papio anubis, Ictalurus furcatus, Homo sapiens, Oreochromis niloticus, Taeniopygia guttata, Peromyscus maniculatus bairdii, Fundulus heteroclitus, Sparus aurata, Dicentrarchus labrax, Pongo abelii, Ursus americanus, Equus caballus, Dissostichus mawsoni, Osmerus mordax, Oryctolagus cuniculus, Macaca nemestrina, Anoplopoma fimbria, Cyprinus carpio, Esox lucius, Squalus acanthias, Leucoraja erinacea, Rana catesbeiana, Takifugu rubripes, Cynops pyrrhogaster, Sebastes caurinus, Misgurnus anguillicaudatus, Perca flavescens, Paralabidochromis chilotes, Hippoglossus hippoglossus, Ambystoma tigrinum tigrinum, Cavia porcellus, Bos indicus, Rutilus rutilus, Meleagris gallopavo, Lonchura striata domestica, Poecilia reticulata, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Oncorhynchus tshawytscha, Capra hircus, Paralichthys olivaceus, Psetta maxima, Pan troglodytes verus, Lates calcarifer, Oncorhynchus nerka, Sebastes rastrelliger, Thymallus thymallus, Solea senegalensis, Coregonus clupeaformis, Torpedo californica, Thunnus thynnus, Cynoglossus semilaevis, Salvelinus fontinalis, Macaca mulatta

ABOUT THIS RECORD

ID: MNEST032574
species: Mus musculus
miRNA family: mir-3470
source: miRBase, original name: mmu-mir-3470b (MI0014697)

Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TCACTCTGTAGACCAGGCTGG

miRNA*
TGCCTCTGCCTCCCGAGT

mismatches: 6
bulges: 3

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pre-miRNA
GGATTCTCTGTGTAGCCTTGGCTGTCCTGGCACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAAAAATTCACCTGCCTCTGCCTCCCGAGTGCTGGGA
CTAAAGGCATGCGCTACCAATGCCCG

dot-bracket secondary structure
((.......((((((((((....((((..((((((.....(((((...(((.((...((((........)))))).)))))))).....))))))..)))
)..))))).)))))........))..

SIMILARITIES

miRBase mmu-mir-1935: 0.00000000003

PMRD no hits

microPC no hits

UniProt no hits

RFAM Metazoa_SRP: 0.0000005

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references
[1] Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A, Mol Hum Reprod. 16:463-471(2010)., "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing"