ABOUT THIS RECORDspecies: Mus musculus
miRNA family: mir-3470
source: miRBase, original name: mmu-mir-3470b (MI0014697)
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCACTCTGTAGACCAGGCTGG miRNA* TGCCTCTGCCTCCCGAGT mismatches: 6 bulges: 3 |
pre-miRNA
GGATTCTCTGTGTAGCCTTGGCTGTCCTGGCACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAAAAATTCACCTGCCTCTGCCTCCCGAGTGCTGGGA
CTAAAGGCATGCGCTACCAATGCCCG
dot-bracket secondary structure
((.......((((((((((....((((..((((((.....(((((...(((.((...((((........)))))).)))))))).....))))))..)))
)..))))).)))))........))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A, Mol Hum Reprod. 16:463-471(2010)., "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing"
GGATTCTCTGTGTAGCCTTGGCTGTCCTGGCACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAAAAATTCACCTGCCTCTGCCTCCCGAGTGCTGGGA
CTAAAGGCATGCGCTACCAATGCCCG
dot-bracket secondary structure
((.......((((((((((....((((..((((((.....(((((...(((.((...((((........)))))).)))))))).....))))))..)))
)..))))).)))))........))..
SIMILARITIES| miRBase mmu-mir-1935: 0.00000000003 PMRD no hits microPC no hits | UniProt no hits RFAM Metazoa_SRP: 0.0000005 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A, Mol Hum Reprod. 16:463-471(2010)., "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing"
