miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Rattus norvegicus, Xenopus laevis, Gallus gallus, Canis lupus familiaris, Ovis aries, Macaca fascicularis, Anolis carolinensis, Trichosurus vulpecula, Papio anubis, Homo sapiens, Taeniopygia guttata, Peromyscus maniculatus bairdii, Pongo abelii, Ursus americanus, Equus caballus, Oryctolagus cuniculus, Macaca nemestrina, Rana catesbeiana, Cynops pyrrhogaster, Ambystoma tigrinum tigrinum, Cavia porcellus, Bos indicus, Meleagris gallopavo, Lonchura striata domestica, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Capra hircus, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST032574
species: Mus musculus
miRNA family: mir-3470
source: miRBase, original name: mmu-mir-3470b (MI0014697)

Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCACTCTGTAGACCAGGCTGG

miRNA*
 TGCCTCTGCCTCCCGAGT

mismatches: 6
bulges: 3
View larger
pre-miRNA
 GGATTCTCTGTGTAGCCTTGGCTGTCCTGGCACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAAAAATTCACCTGCCTCTGCCTCCCGAGTGCTGGGA
CTAAAGGCATGCGCTACCAATGCCCG

dot-bracket secondary structure
((.......((((((((((....((((..((((((.....(((((...(((.((...((((........)))))).)))))))).....))))))..)))
)..))))).)))))........))..


SIMILARITIES
miRBase mmu-mir-1935: 0.00000000003

PMRD no hits

microPC no hits		UniProt no hits

RFAM Metazoa_SRP: 0.0000005

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references
[1] Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A, Mol Hum Reprod. 16:463-471(2010)., "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing"



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