ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: mir-7
source: miRBase, original name: rno-mir-7b (MI0000837)
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAAGACTTGTGATTTTGTTGT miRNA* AACAAGTCACAGCCAGCCTCA mismatches: 5 bulges: 2 |
pre-miRNA
AGGCCAGAACACATGAGCCAATGCTATGTGGAAGACTTGTGATTTTGTTGTTCTGATATGATATGACAACAAGTCACAGCCAGCCTCATAGAGTGGACTC
CCATCACCTT
dot-bracket secondary structure
..............((((((...(((((.((.....(((((((((.((((((.((......)).)))))))))))))))....)).)))))..))).)))
..........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M, Cell. 129:1401-1414(2007)., "A mammalian microRNA expression atlas based on small RNA library sequencing"
AGGCCAGAACACATGAGCCAATGCTATGTGGAAGACTTGTGATTTTGTTGTTCTGATATGATATGACAACAAGTCACAGCCAGCCTCATAGAGTGGACTC
CCATCACCTT
dot-bracket secondary structure
..............((((((...(((((.((.....(((((((((.((((((.((......)).)))))))))))))))....)).)))))..))).)))
..........
SIMILARITIES| miRBase mmu-mir-7b: 5e-43 PMRD no hits microPC no hits | UniProt no hits RFAM mir-7: 1e-37 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M, Cell. 129:1401-1414(2007)., "A mammalian microRNA expression atlas based on small RNA library sequencing"
