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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST003267
species: Arabidopsis thaliana
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCATCCTCATCATCATCGTCC

miRNA*
 ATGATGATGCTTGATTCATAAAT

mismatches: 4
bulges: 2
View larger
pre-miRNA
 AGGGATGATGATGCTTGATTCATAAATTAAATACCAAGGTATATTATTAAAGTGCTTTAGAGAAAATAAACACACCAATAGAAAAACGAACGAAACTCCT
ACAAGATGAATTTCACTTTTAAAAATCCCAAAACCTTTTCTCAATCCTCATTCTTGATGAACAGAGAATGACCTGAATTATATTTTCACGCAATCCTTTT
ATGTCTGGTAGAGCGTAGTAAAAGATTACTGTTGCTTGCATTCGGGTGGCCTCTCATCTTGTTTACCTTCACCAACTATCTGAGATCTCCCTCCCTTCTT
GTTGCCGATTGATGGCTTCTTTTTGGTCTTGCTTTCTTCTTCATCCTCATCATCATCGTCCTCCTCATCCT

dot-bracket secondary structure
.((((((((((((..(((...((.((.........(((((((.........))))))).((((((.(((....(((((.((((....(((..........
((((((((((((..............................)))..((((((((........))))))))..((((.......)))).((...(((...
((((..(((((...(((((.....)))))..))))).))))..)))..))...))))))))).....)))...(((.....(((......))).......
)))((((.....))))))))..))))).))).)))))).)).))..))).)))))))))))).........


SIMILARITIES
miRBase osa-MIR414: 0.00008

PMRD osa-miR414: 0.00008

microPC no hits		UniProt no hits

RFAM mir-598: 0.0004		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
download this record




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