ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: mir-202
source: miRBase, original name: rno-mir-202 (MI0012584)
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCTATGCATATACTTCT miRNA* AGGTATAGCGCATGGGAAAA mismatches: 1 bulges: 1 |
pre-miRNA
GTTCCTTTTTCCTATGCATATACTTCTTTGTGGATCTGGTCTAAAGAGGTATAGCGCATGGGAAAATGGAGC
dot-bracket secondary structure
(((((.(((((((((((.((((((((((..(((((...)))))))))))))))..))))))))))).)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD
references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
[2] Artzi S, Kiezun A, Shomron N, BMC Bioinformatics. 9:39(2008)., "miRNAminer: a tool for homologous microRNA gene search"
GTTCCTTTTTCCTATGCATATACTTCTTTGTGGATCTGGTCTAAAGAGGTATAGCGCATGGGAAAATGGAGC
dot-bracket secondary structure
(((((.(((((((((((.((((((((((..(((((...)))))))))))))))..))))))))))).)))))
SIMILARITIES| miRBase mmu-mir-202: 5e-33 PMRD no hits microPC no hits | UniProt no hits RFAM mir-202: 3e-25 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD
references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
[2] Artzi S, Kiezun A, Shomron N, BMC Bioinformatics. 9:39(2008)., "miRNAminer: a tool for homologous microRNA gene search"
