ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf17
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCGACCTCGTGGTCGAGTGG miRNA* ACTCGACCAGGGGGTCGAGTG mismatches: 1 bulges: 0 |
pre-miRNA
AGTGATGTCCTCTACTCGACCAGGGGGTCGAGTGATCTTTTGAGATCTTGAAGCTCCTACTCGACCTCGTGGTCGAGTGGTTTGACATGA
dot-bracket secondary structure
....(((((..(((((((((((.((((((((((((.((((.........)))).))..)))))))))).)))))))))))...)))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
AGTGATGTCCTCTACTCGACCAGGGGGTCGAGTGATCTTTTGAGATCTTGAAGCTCCTACTCGACCTCGTGGTCGAGTGGTTTGACATGA
dot-bracket secondary structure
....(((((..(((((((((((.((((((((((((.((((.........)))).))..)))))))))).)))))))))))...)))))..
SIMILARITIES| miRBase no hits PMRD ath-miRf10840-akr: 4e-46 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: ath-miRf10840-akr from PMRD (MNEST047940) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
