ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf16
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCGACCTCGGGGTCGAGT miRNA* TCGACCTCGGAGTCGAGTGAT mismatches: 1 bulges: 0 |
pre-miRNA
GGGATGAAGACACTCGACCTCGGAGTCGAGTGATGTGGTCAAGTAGTGATGTCCTCTACTCGACCAGGGGGTCGAGTGATCTGTTGAGATCTTGAAGCTC
CTACTCGACCTCGGGGTCGAGTGGTTTGACAT
dot-bracket secondary structure
..........(((((((((((((.((((((((..((..(((((...(((((.....(((((((((....)))))))))...)))))....))))).))..
.)))))))).))))))))))))).........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
Source sequences
download this record
GGGATGAAGACACTCGACCTCGGAGTCGAGTGATGTGGTCAAGTAGTGATGTCCTCTACTCGACCAGGGGGTCGAGTGATCTGTTGAGATCTTGAAGCTC
CTACTCGACCTCGGGGTCGAGTGGTTTGACAT
dot-bracket secondary structure
..........(((((((((((((.((((((((..((..(((((...(((((.....(((((((((....)))))))))...)))))....))))).))..
.)))))))).))))))))))))).........
SIMILARITIES| miRBase no hits PMRD ath-miRf10335-akr: 9e-70 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
Source sequences
download this record
