ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: mir-344
source: miRBase, original name: rno-mir-344b-1 (MI0015472)
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATATAACCAAAGCCCGACTGT miRNA* AGTCAGGCTGCTGGTTATATTCCA mismatches: 3 bulges: 2 |
pre-miRNA
AGAGACCTGATCAGTCAGGCTGCTGGTTATATTCCAGGACTTCTCTGGTCCTGGATATAACCAAAGCCCGACTGTTAAATAAAAGTAAGAATGTGTCT
dot-bracket secondary structure
..(((((....(((((.((((..(((((((((.((((((((.....))))))))))))))))).)))).)))))..................).))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD
references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
AGAGACCTGATCAGTCAGGCTGCTGGTTATATTCCAGGACTTCTCTGGTCCTGGATATAACCAAAGCCCGACTGTTAAATAAAAGTAAGAATGTGTCT
dot-bracket secondary structure
..(((((....(((((.((((..(((((((((.((((((((.....))))))))))))))))).)))).)))))..................).))))
SIMILARITIES| miRBase rno-mir-344b-1: 8e-51 PMRD no hits microPC no hits | UniProt no hits RFAM mir-344: 3e-38 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD
references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
