ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: mir-122
source: miRBase, original name: rno-mir-3591 (MI0015471)
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AACACCATTGTCACACTCCA miRNA* TAGTGTGATGATGGCGTTTG mismatches: 5 bulges: 0 |
pre-miRNA
GTAGACGGATAGCCTAGCAGTAGCTGTTTAGTGTGATGATGGCGTTTGATGTTTTGGACACAAACACCATTGTCACACTCCAGAGCTCTGCTAAGGAGAG
TCTGTAGGC
dot-bracket secondary structure
((..((((((..((((((((.((((.(..(((((((..((((.(((((.((((...))))))))).))))..)))))))..).))))))))).)))...)
)))))..))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD
references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
GTAGACGGATAGCCTAGCAGTAGCTGTTTAGTGTGATGATGGCGTTTGATGTTTTGGACACAAACACCATTGTCACACTCCAGAGCTCTGCTAAGGAGAG
TCTGTAGGC
dot-bracket secondary structure
((..((((((..((((((((.((((.(..(((((((..((((.(((((.((((...))))))))).))))..)))))))..).))))))))).)))...)
)))))..))
SIMILARITIES| miRBase rno-mir-122: 5e-43 PMRD no hits microPC no hits | UniProt no hits RFAM mir-122: 3e-35 |
Identical with: rno-mir-122 from miRBase (MNEST032716) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD
references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
