ABOUT THIS RECORDspecies: Rattus norvegicus
source: miRBase, original name: rno-mir-3592 (MI0015473)
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGTGTTGTCCGTGAATGATT miRNA* TCCACCACGAACAACTTCTCT mismatches: 8 bulges: 0 |
pre-miRNA
GTCCTTAGAGGTAGCATTTGGTACTGAAAAAAGTGTTGTCCGTGAATGATTCGTCACAAGTAAAGCGAATCCACCACGAACAACTTCTCTTCAAGTACCA
CAGAAAAGCAGAGACA
dot-bracket secondary structure
(((((........((.((((((((((((......(((((.((((...(((((((..........)))))))...)))).))))).....))).)))))))
....)).)))).))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD
references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
GTCCTTAGAGGTAGCATTTGGTACTGAAAAAAGTGTTGTCCGTGAATGATTCGTCACAAGTAAAGCGAATCCACCACGAACAACTTCTCTTCAAGTACCA
CAGAAAAGCAGAGACA
dot-bracket secondary structure
(((((........((.((((((((((((......(((((.((((...(((((((..........)))))))...)))).))))).....))).)))))))
....)).)))).))).
SIMILARITIES| miRBase oar-mir-382: 1e-50 PMRD no hits microPC no hits | UniProt no hits RFAM mir-154: 2e-36 |
Identical with: mmu-mir-382 from miRBase (MNEST032055) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD
references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
