miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Sus scrofa, Bos taurus, Ovis aries, Bos indicus, Bos sp., Capra hircus



ABOUT THIS RECORD

ID: MNEST033160
species: Bos taurus
miRNA family: mir-29
source: miRBase, original name: bta-mir-29b-2 (MI0005043)

Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAGCACCATTTGAAATCAGTGTT

miRNA*
GCTGGTTTCACATGGTGGCTTAGA

mismatches: 1
bulges: 3

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pre-miRNA
CTTCTGGAAGCTGGTTTCACATGGTGGCTTAGATTTTTCCATCTTTGTATCTAGCACCATTTGAAATCAGTGTTTTAGGAG

dot-bracket secondary structure
(((((((((((((((((((.((((((.((.((((..............)))))))))))).)))))))))).)))))))))


SIMILARITIES
miRBase eca-mir-29b-2: 9e-41

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-29: 6e-27

Identical with: eca-mir-29b-2 from miRBase (MNEST026972)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Array, qRT-PCR

references

[1] Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M, Mol Reprod Dev. 76:665-677(2009)., "Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach"
[2] Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP, Physiol Genomics. 29:35-43(2007)., "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues"




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