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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST003333
species: Arabidopsis thaliana
miRNA family: miR167a
source: miRNEST

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GATCATGTTCGCAGTTTCACC

miRNA*
 TGAAGCTGCCAGCATGATCTA

mismatches: 3
bulges: 0
View larger
pre-miRNA
 CGGCATCTGATGAAGCTGCCAGCATGATCTAATTAGCTTTCTTTATCCTTTGTTGTGTTTCATGACGATGGTTAAGAGATCAGTCTCGATTAGATCATGT
TCGCAGTTTCACCCGTTGAC

dot-bracket secondary structure
..........(((((((((.((((((((((((((.(((.(((((..((.((((((((...)))))))).))...)))))..)))...)))))))))))))
).))))))))).........


SIMILARITIES
miRBase ath-MIR167a: 8e-64

PMRD ath-miR167a: 8e-64

microPC miR167: 2e-52		UniProt no hits

RFAM MIR167_1: 1e-62		most similar mature miRNAs

Identical with: ath-MIR167a from miRBase (MNEST040039)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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