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Species belonging to selected taxon:

Bos taurus, Ovis aries, Bos indicus, Bos sp., Capra hircus



ABOUT THIS RECORD

ID: MNEST033550
species: Bos taurus
miRNA family: mir-2300
source: miRBase, original name: bta-mir-2300b (MI0011311)

Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGGAGACAAAACTAGCTGAGGA

miRNA*
CTTAGCTAGTTTTGCCTCCCTG

mismatches: 1
bulges: 0

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pre-miRNA
TCTTATTCCTTAGCTAGTTTTGCCTCCCTGCTTATGATCACACACAGGGAGACAAAACTAGCTGAGGAATAAGA

dot-bracket secondary structure
((((((((((((((((((((((.(((((((..............))))))).))))))))))))))))))))))


SIMILARITIES
miRBase bta-mir-2300a: 1e-36

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

Identical with: bta-mir-2300a from miRBase (MNEST033549)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence

references

[1] Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ, PLoS One. 4:e6349(2009)., "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection"




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