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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST003366
species: Arabidopsis thaliana
miRNA family: MIRf16
source: miRNEST

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TACTCGACCTCGGGGTCTAGT

miRNA*
 TCAGCCAGGGGGTCGAGTGGT

mismatches: 4
bulges: 0
View larger
pre-miRNA
 GAAATTGTGAAGTCCCCTACTCAGCCAGGGGGTCGAGTGGTCTGTTGAGGTCTTGAAGCTTCTACTCGACCTCGGGGTCTAGTGGTTTGACATGATCAGG


dot-bracket secondary structure
...........(((..(((((..(((..((((((((((((...(((..........)))..))))))))))))..)))..)))))...))).........



SIMILARITIES
miRBase no hits

PMRD ath-miRf10778-akr: 5e-40

microPC no hits		UniProt no hits

RFAM MIR854: 0.00002		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




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