ABOUT THIS RECORDspecies: Bos taurus
miRNA family: let-7
source: miRBase, original name: bta-mir-3596 (MI0015952)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AACCACACAACCTACTACCTCA miRNA* AGGCAGTAGGTTGTATAGTTA mismatches: 9 bulges: 0 |
pre-miRNA
CTCGAGGAAGGCAGTAGGTTGTATAGTTATCTTCCGAGGGGGCAACATCACTACCCTGAAACCACACAACCTACTACCTCACC
dot-bracket secondary structure
.....(..(((.((((((((((...(((..(((.....)))..))).(((......)))......)))))))))).)))..).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D, BMC Genomics. 10:443(2009)., "Identification and characterization of miRNAs expressed in the bovine ovary"
CTCGAGGAAGGCAGTAGGTTGTATAGTTATCTTCCGAGGGGGCAACATCACTACCCTGAAACCACACAACCTACTACCTCACC
dot-bracket secondary structure
.....(..(((.((((((((((...(((..(((.....)))..))).(((......)))......)))))))))).)))..).
SIMILARITIES| miRBase bta-let-7b: 6e-39 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 5e-24 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D, BMC Genomics. 10:443(2009)., "Identification and characterization of miRNAs expressed in the bovine ovary"
