miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cichorium intybus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Taraxacum kok-saghyz, Taraxacum officinale, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST000339
species: Cichorium intybus
miRNA family: miR393b
source: miRNEST

Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATCATGCGATCTCTTTGGAAG

miRNA*
 TCTACAGTGATCGCATTGATCC

mismatches: 2
bulges: 1
View larger
pre-miRNA
 GGTTGCAAGCTTCTACAGTGATCGCATTGATCCAGTTTATTACTCTATTCGAGTTTGATTCATTCATCTATCATATCCATGAAAGCAGCTGCCAATTTTT
TTATCCCAGCTGATAATTTGCATCATGCGATCTCTTTGGAAGTTTCCGTC

dot-bracket secondary structure
...((.(((((((((.((.((((((((.(((.(((.((((.((((.....)))).(((.....))).((.((((....)))).))((((((.........
......)))))))))).))).))))))))))).)).))))))))).))..


SIMILARITIES
miRBase no hits

PMRD no hits

microPC miR393: 1e-35		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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