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Species belonging to selected taxon:
Mus musculus
,
Sus scrofa
,
Bos taurus
,
Danio rerio
,
Rattus norvegicus
,
Xenopus laevis
,
Oryzias latipes
,
Gallus gallus
,
Salmo salar
,
Canis lupus familiaris
,
Ictalurus punctatus
,
Ovis aries
,
Oncorhynchus mykiss
,
Gasterosteus aculeatus
,
Pimephales promelas
,
Gadus morhua
,
Macaca fascicularis
,
Anolis carolinensis
,
Trichosurus vulpecula
,
Papio anubis
,
Ictalurus furcatus
,
Homo sapiens
,
Oreochromis niloticus
,
Taeniopygia guttata
,
Peromyscus maniculatus bairdii
,
Fundulus heteroclitus
,
Sparus aurata
,
Dicentrarchus labrax
,
Pongo abelii
,
Ursus americanus
,
Equus caballus
,
Dissostichus mawsoni
,
Osmerus mordax
,
Oryctolagus cuniculus
,
Macaca nemestrina
,
Anoplopoma fimbria
,
Cyprinus carpio
,
Esox lucius
,
Rana catesbeiana
,
Takifugu rubripes
,
Cynops pyrrhogaster
,
Sebastes caurinus
,
Misgurnus anguillicaudatus
,
Perca flavescens
,
Paralabidochromis chilotes
,
Hippoglossus hippoglossus
,
Ambystoma tigrinum tigrinum
,
Cavia porcellus
,
Bos indicus
,
Rutilus rutilus
,
Meleagris gallopavo
,
Lonchura striata domestica
,
Poecilia reticulata
,
Bos sp.
,
Macropus eugenii
,
Peromyscus polionotus subgriseus
,
Oncorhynchus tshawytscha
,
Capra hircus
,
Paralichthys olivaceus
,
Psetta maxima
,
Pan troglodytes verus
,
Lates calcarifer
,
Oncorhynchus nerka
,
Sebastes rastrelliger
,
Thymallus thymallus
,
Solea senegalensis
,
Coregonus clupeaformis
,
Thunnus thynnus
,
Cynoglossus semilaevis
,
Salvelinus fontinalis
,
Macaca mulatta
ABOUT THIS RECORD
ID:
MNEST033933
species:
Sus scrofa
miRNA family:
mir-28
source:
miRBase, original name:
ssc-mir-28
(
MI0002430
)
Taxonomy by NCBI:
Sus scrofa
Sus
Suidae
Suina
Cetartiodactyla
Laurasiatheria
Eutheria
Theria
Mammalia
Amniota
Tetrapoda
Sarcopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AAGGAGCTCACACTCTATTGAG
miRNA*
CACTAGATTGTGAGCTCCTGGA
mismatches:
5
bulges:
0
View larger
pre-miRNA
GGTCCTTGCCCTC
AAGGAGCTCACACTCTATTGAG
TTGCCTTTCTGTCTTCCC
CACTAGATTGTGAGCTCCTGGA
GGGCAGGCACT
dot-bracket secondary structure
(((.(((((((((
.(((((((((((.((((.((..
..................
)).)))).))))))))))).))
))))))).)))
SIMILARITIES
miRBase
ssc-mir-28
:
1e-43
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-28: 3e-35
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Solexa
references
[
1
] Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L,
BMC Genomics. 6:70(2005).
,
"Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing"
[
2
] Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B,
Anim Genet. 41:159-168(2010).
,
"MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"