ABOUT THIS RECORDspecies: Sus scrofa
miRNA family: mir-133
source: miRBase, original name: ssc-mir-133b (MI0013089)
Taxonomy by NCBI:
Sus scrofa Sus Suidae Suina Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGTCCCCTTCAACCAGCTAT miRNA* GGCTGGTCAAACGGAACCAAGTC mismatches: 5 bulges: 0 |
pre-miRNA
CCTGCTCTGGCTGGTCAAACGGAACCAAGTCCGTCTTCCTGAGAGGTTTGGTCCCCTTCAACCAGCTATAGCAGGGCTGG
dot-bracket secondary structure
((((((.((((((((..((.((.((((((.((.((((...)))))))))))).)).))..)))))))).)))))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B, Anim Genet. 41:159-168(2010)., "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"
CCTGCTCTGGCTGGTCAAACGGAACCAAGTCCGTCTTCCTGAGAGGTTTGGTCCCCTTCAACCAGCTATAGCAGGGCTGG
dot-bracket secondary structure
((((((.((((((((..((.((.((((((.((.((((...)))))))))))).)).))..)))))))).)))))).....
SIMILARITIES| miRBase cfa-mir-133b: 9e-38 PMRD no hits microPC no hits | UniProt no hits RFAM mir-133: 2e-36 |
Identical with: eca-mir-133b from miRBase (MNEST027027) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B, Anim Genet. 41:159-168(2010)., "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"
