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Species belonging to selected taxon:
Sus scrofa
ABOUT THIS RECORD
ID:
MNEST033999
species:
Sus scrofa
miRNA family:
mir-148
source:
miRBase, original name:
ssc-mir-148b
(
MI0013118
)
Taxonomy by NCBI:
Sus scrofa
Sus
Suidae
Suina
Cetartiodactyla
Laurasiatheria
Eutheria
Theria
Mammalia
Amniota
Tetrapoda
Sarcopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCAGTGCATCACAGAACTTTGT
miRNA*
GAAGTTCTGTTATACACTCAGGCT
mismatches:
4
bulges:
2
View larger
pre-miRNA
ATTTGAGGT
GAAGTTCTGTTATACACTCAGGCT
GTGGCTCTCTGAAAG
TCAGTGCATCACAGAACTTTGT
CTCGAAAGCT
dot-bracket secondary structure
.(((((((.
.(((((((((.((.((((..((((
....(.....)..))
)))))).)).)))))))))..)
))))))....
SIMILARITIES
miRBase
eca-mir-148b
:
4e-40
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-148: 2e-36
Identical with:
cfa-mir-148b
from miRBase (
MNEST026724
)
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Solexa
deep sequencing data evidence
references
[
1
] Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B,
Anim Genet. 41:159-168(2010).
,
"MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"