ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR398
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCTG miRNA* GGGTTGATATGAGAACACACG mismatches: 2 bulges: 0 |
pre-miRNA
GTTAAGGTAGTGGATCTCGACAGGGTTGATATGAGAACACACGAGCAATCAACGGCTATAACGACGCTACGTCATTGTTACAGCTCTCGTTTCATGTGTT
CTCAGGTCACCCCTGCTGAGCTCTTTCTCTACCG
dot-bracket secondary structure
.....(((((.(((.((((.(((((.((((.((((((((((.(((........((((.((((((((...))))...)))).)))).....))).))))))
)))).)))).))))).)))).)))....))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
GTTAAGGTAGTGGATCTCGACAGGGTTGATATGAGAACACACGAGCAATCAACGGCTATAACGACGCTACGTCATTGTTACAGCTCTCGTTTCATGTGTT
CTCAGGTCACCCCTGCTGAGCTCTTTCTCTACCG
dot-bracket secondary structure
.....(((((.(((.((((.(((((.((((.((((((((((.(((........((((.((((((((...))))...)))).)))).....))).))))))
)))).)))).))))).)))).)))....))))).
SIMILARITIES| miRBase ath-MIR398c: 8e-61 PMRD ath-miR398c: 8e-61 microPC miR398: 0.000000000000007 | UniProt no hits RFAM MIR398: 1e-59 | most similar mature miRNAs |
Identical with: ath-MIR398c from miRBase (MNEST040091) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
