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Species belonging to selected taxon:
Sus scrofa
ABOUT THIS RECORD
ID:
MNEST034141
species:
Sus scrofa
miRNA family:
mir-1271
source:
miRBase, original name:
ssc-mir-1271
(
MI0015922
)
Taxonomy by NCBI:
Sus scrofa
Sus
Suidae
Suina
Cetartiodactyla
Laurasiatheria
Eutheria
Theria
Mammalia
Amniota
Tetrapoda
Sarcopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCCTGCTATGTGCCAGGCA
miRNA*
CTTGGCACCTAGTAAGCACT
mismatches:
2
bulges:
0
View larger
pre-miRNA
TAGATCAGTG
CTTGGCACCTAGTAAGCACT
CAGTATATACTTGTTGAG
TGCCTGCTATGTGCCAGGCA
TTGTGCTGAG
dot-bracket secondary structure
(((..(((((
((((((((.(((((.(((((
(((((......)))))))
))).))))).))))))))))
)))..)))..
SIMILARITIES
miRBase
bta-mir-1271
:
5e-36
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-598: 0.00006
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Solexa
references
[
1
] Sharbati S, Friedlander MR, Sharbati J, Hoeke L, Chen W, Keller A, Stahler PF, Rajewsky N, Einspanier R,
BMC Genomics. 11:275(2010).
,
"Deciphering the porcine intestinal microRNA transcriptome"