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Species belonging to selected taxon:
Sus scrofa
ABOUT THIS RECORD
ID:
MNEST034143
species:
Sus scrofa
source:
miRBase, original name:
ssc-mir-1285
(
MI0013164
)
Taxonomy by NCBI:
Sus scrofa
Sus
Suidae
Suina
Cetartiodactyla
Laurasiatheria
Eutheria
Theria
Mammalia
Amniota
Tetrapoda
Sarcopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CTGGGCAACATAGCGAGACCCCGT
miRNA*
GGGATCGCGCCTGTGAATAGCCACTGT
mismatches:
8
bulges:
3
View larger
pre-miRNA
GCTGATCAGTAGT
GGGATCGCGCCTGTGAATAGCCACTGT
ACTCCAGC
CTGGGCAACATAGCGAGACCCCGT
CTCTTTTG
dot-bracket secondary structure
.......((.(((
(((.((.(((.((((....(((.(((.
....))).
...)))..))))))).)).)))).
))))....
SIMILARITIES
miRBase
hsa-mir-1273e
:
0.0000009
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
Metazoa_SRP: 1e-34
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Solexa
references
[
1
] Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B,
Anim Genet. 41:159-168(2010).
,
"MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"