ABOUT THIS RECORDspecies: Sus scrofa
miRNA family: mir-1306
source: miRBase, original name: ssc-mir-1306 (MI0013148)
Taxonomy by NCBI:
Sus scrofa Sus Suidae Suina Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACGTTGGCTCTGGTGGTGATG miRNA* CACCACCTCCCCTGCAAACGTCC mismatches: 6 bulges: 3 |
pre-miRNA
GTCTCCACCACCTCCCCTGCAAACGTCCAGTGATGCAGAGGTAATGGACGTTGGCTCTGGTGGTGATGGACAGGCCGAAC
dot-bracket secondary structure
((((.(((((((......((.((((((((....(((....))).)))))))).))...)))))))..)))).........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B, Anim Genet. 41:159-168(2010)., "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"
GTCTCCACCACCTCCCCTGCAAACGTCCAGTGATGCAGAGGTAATGGACGTTGGCTCTGGTGGTGATGGACAGGCCGAAC
dot-bracket secondary structure
((((.(((((((......((.((((((((....(((....))).)))))))).))...)))))))..)))).........
SIMILARITIES| miRBase ssc-mir-1306: 4e-40 PMRD no hits microPC no hits | UniProt sp|A6QR44|DGCR8_BOVIN: 0.00000004 RFAM mir-1306: 2e-32 |
Identical with: bta-mir-1306 from miRBase (MNEST033487) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B, Anim Genet. 41:159-168(2010)., "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"
