ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR157
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGACAGAAGAGAGTAAGCAA miRNA* GTTTCACCGTCTTTAGTCAGTT mismatches: 5 bulges: 1 |
pre-miRNA
ATTACAAGGAGCTTAAAGAGACTGACAGAAGAGAGTAAGCAAAGCCTGTTTCATTAACCTTCAAACCGGGATCTCACACGTTTCACCGTCTTTAGTCAGT
TGTGCTTTTCCGCCTTCTC
dot-bracket secondary structure
.....((((.....((((.(((((((.(((((..((((((....((((.((............)).)))).........)))).))..))))).))))))
)...))))....))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ATTACAAGGAGCTTAAAGAGACTGACAGAAGAGAGTAAGCAAAGCCTGTTTCATTAACCTTCAAACCGGGATCTCACACGTTTCACCGTCTTTAGTCAGT
TGTGCTTTTCCGCCTTCTC
dot-bracket secondary structure
.....((((.....((((.(((((((.(((((..((((((....((((.((............)).)))).........)))).))..))))).))))))
)...))))....))))...
SIMILARITIES| miRBase vvi-MIR156d: 0.00009 PMRD vvi-miR156d: 0.00009 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
