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Species belonging to selected taxon:
Danio rerio
,
Oryzias latipes
,
Salmo salar
,
Ictalurus punctatus
,
Oncorhynchus mykiss
,
Gasterosteus aculeatus
,
Pimephales promelas
,
Gadus morhua
,
Ictalurus furcatus
,
Oreochromis niloticus
,
Fundulus heteroclitus
,
Sparus aurata
,
Dicentrarchus labrax
,
Dissostichus mawsoni
,
Osmerus mordax
,
Anoplopoma fimbria
,
Cyprinus carpio
,
Esox lucius
,
Takifugu rubripes
,
Sebastes caurinus
,
Misgurnus anguillicaudatus
,
Perca flavescens
,
Paralabidochromis chilotes
,
Hippoglossus hippoglossus
,
Rutilus rutilus
,
Poecilia reticulata
,
Oncorhynchus tshawytscha
,
Paralichthys olivaceus
,
Psetta maxima
,
Lates calcarifer
,
Oncorhynchus nerka
,
Sebastes rastrelliger
,
Thymallus thymallus
,
Solea senegalensis
,
Coregonus clupeaformis
,
Thunnus thynnus
,
Cynoglossus semilaevis
,
Salvelinus fontinalis
ABOUT THIS RECORD
ID:
MNEST034436
species:
Danio rerio
miRNA family:
mir-430
source:
miRBase, original name:
dre-mir-430b-2
(
MI0002142
)
Taxonomy by NCBI:
Danio rerio
Danio
Cyprinidae
Cyprinoidea
Cypriniformes
Cypriniphysi
Otophysi
Ostariophysi
Otocephala
Clupeocephala
Elopocephala
Teleostei
Neopterygii
Actinopteri
Actinopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AAAGTGCTATCAAGTTGGGGTAG
miRNA*
ACTCTAACTTTAGCATCTTTCT
mismatches:
1
bulges:
3
View larger
pre-miRNA
CAGTTGAGGTCA
ACTCTAACTTTAGCATCTTTCT
TTTAAGCAAAGTAG
AAAGTGCTATCAAGTTGGGGTAG
ATGTTTGCTG
dot-bracket secondary structure
((((.((.(((.
(((((((((((((((.((((((
............))
)))))))))..)))))))))).)
)).)).))))
SIMILARITIES
miRBase
dre-mir-430b-3
:
9e-41
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
miR-430: 4e-37
Identical with:
dre-mir-430b-4
from miRBase (
MNEST034442
)
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
cloned
references
[
1
] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T,
Genes Dev. 19:1288-1293(2005).
,
"The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
[
2
] Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville S, Hammond SM, Bartel DP, Schier AF,
Science. 308:833-838(2005).
,
"MicroRNAs regulate brain morphogenesis in zebrafish"