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Species belonging to selected taxon:
Danio rerio
,
Ictalurus punctatus
,
Pimephales promelas
,
Ictalurus furcatus
,
Cyprinus carpio
,
Misgurnus anguillicaudatus
,
Rutilus rutilus
ABOUT THIS RECORD
ID:
MNEST034518
species:
Danio rerio
source:
miRBase, original name:
dre-mir-2193
(
MI0010854
)
Taxonomy by NCBI:
Danio rerio
Danio
Cyprinidae
Cyprinoidea
Cypriniformes
Cypriniphysi
Otophysi
Ostariophysi
Otocephala
Clupeocephala
Elopocephala
Teleostei
Neopterygii
Actinopteri
Actinopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TATGTGTGTATCAATTGTGTGAAA
miRNA*
TCACATTTATAAGCATCAAACT
mismatches:
8
bulges:
2
View larger
pre-miRNA
CAAAATCTTCATCAATCATGGG
TATGTGTGTATCAATTGTGTGAAA
AAATTCT
TCACATTTATAAGCATCAAACT
TCGATGAGTAAAGATTTTTATAAAA
TGCGGCCACG
dot-bracket secondary structure
.((((((((.((..(((..(((
(.((.((((.......(((((((.
......)
))))))......)))))).)))
).)))..)).)))))))).......
..........
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
references
[
1
] Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA,
BMC Genomics. 10:195(2009).
,
"Parallel DNA pyrosequencing unveils new zebrafish microRNAs"