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Species belonging to selected taxon:
Danio rerio
,
Oryzias latipes
,
Salmo salar
,
Ictalurus punctatus
,
Oncorhynchus mykiss
,
Gasterosteus aculeatus
,
Pimephales promelas
,
Gadus morhua
,
Ictalurus furcatus
,
Oreochromis niloticus
,
Fundulus heteroclitus
,
Sparus aurata
,
Dicentrarchus labrax
,
Dissostichus mawsoni
,
Osmerus mordax
,
Anoplopoma fimbria
,
Cyprinus carpio
,
Esox lucius
,
Takifugu rubripes
,
Sebastes caurinus
,
Misgurnus anguillicaudatus
,
Perca flavescens
,
Paralabidochromis chilotes
,
Hippoglossus hippoglossus
,
Rutilus rutilus
,
Poecilia reticulata
,
Oncorhynchus tshawytscha
,
Paralichthys olivaceus
,
Psetta maxima
,
Lates calcarifer
,
Oncorhynchus nerka
,
Sebastes rastrelliger
,
Thymallus thymallus
,
Solea senegalensis
,
Coregonus clupeaformis
,
Thunnus thynnus
,
Cynoglossus semilaevis
,
Salvelinus fontinalis
ABOUT THIS RECORD
ID:
MNEST034521
species:
Danio rerio
source:
miRBase, original name:
dre-mir-2196
(
MI0010846
)
Taxonomy by NCBI:
Danio rerio
Danio
Cyprinidae
Cyprinoidea
Cypriniformes
Cypriniphysi
Otophysi
Ostariophysi
Otocephala
Clupeocephala
Elopocephala
Teleostei
Neopterygii
Actinopteri
Actinopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CCTCTCTGTGCTGCCATTTGGGAC
miRNA*
TCCGAAGCGAAAGGGAGGAT
mismatches:
3
bulges:
4
View larger
pre-miRNA
CAGGGTAATTGCTTCGAATGTT
CCTCTCTGTGCTGCCATTTGGGAC
CGT
TCCGAAGCGAAAGGGAGGAT
AATGTTCCTGGGGTTTTTGAAACTGAAACAA
AAAGTAATAA
dot-bracket secondary structure
(((..(((..((((((((((((
(((((((....(((..(((((((.
..)
)))))))))..)))))))).
.))))))..)))))..)))...)))......
..........
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
sp|Q00961|NMDE3_RAT: 0.0000000007
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
references
[
1
] Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA,
BMC Genomics. 10:195(2009).
,
"Parallel DNA pyrosequencing unveils new zebrafish microRNAs"