ABOUT THIS RECORDspecies: Oryzias latipes
miRNA family: mir-430
source: miRBase, original name: ola-mir-430b-1 (MI0013010)
Taxonomy by NCBI:
Oryzias latipes Oryzias Oryziinae Adrianichthyidae Adrianichthyoidei Beloniformes Atherinomorpha Smegmamorpha Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAAGTGCTACATGTTGGGGTAA miRNA* ACCTTGACACAGGCACTGACT mismatches: 6 bulges: 1 |
pre-miRNA
GGACATAAAGATGACCTTGACACAGGCACTGACTTTTTCTTCTTTGTAGTAAGTGCTACATGTTGGGGTAATTTTGGTGTCC
dot-bracket secondary structure
((((((.(((((.((((..(((..((((((.(((.............))).))))))...)))..)))).))))).))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: in-situ, Northern
references
[1] Tani S, Kusakabe R, Naruse K, Sakamoto H, Inoue K, Gene. 449:41-49(2010)., "Genomic organization and embryonic expression of miR-430 in medaka (Oryzias latipes): insights into the post-transcriptional gene regulation in early development"
GGACATAAAGATGACCTTGACACAGGCACTGACTTTTTCTTCTTTGTAGTAAGTGCTACATGTTGGGGTAATTTTGGTGTCC
dot-bracket secondary structure
((((((.(((((.((((..(((..((((((.(((.............))).))))))...)))..)))).))))).))))))
SIMILARITIES| miRBase ola-mir-430b-2: 9e-38 PMRD no hits microPC no hits | UniProt no hits RFAM miR-430: 9e-32 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: in-situ, Northern
references
[1] Tani S, Kusakabe R, Naruse K, Sakamoto H, Inoue K, Gene. 449:41-49(2010)., "Genomic organization and embryonic expression of miR-430 in medaka (Oryzias latipes): insights into the post-transcriptional gene regulation in early development"
