miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST003475
species: Glycine max
miRNA family: miR172c
source: miRNEST

Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GTAGCATCATCAAGATTCACA

miRNA*
 AGAATCTTGATGATGCTGCAT

mismatches: 3
bulges: 0
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pre-miRNA
 ACAGATAGATTAACAGTCGTTATTTGCGGATGTAGCATCATCAAGATTCACATGCAAGCGCAGGTGGTGGGTGGGACTTGATGCAATCTAAGTGCTGTGC
CAGCCAAGCCATAGGTCTTTTGGAACTGAGAATCTTGATGATGCTGCATCAGCCATAAACGACTTCACTTTAAAAAG

dot-bracket secondary structure
..............(((((((....((.(((((((((((((((((((((...(((....)))(((..(((.(((.((.....(((.......))).)).)
)).))).))).(((.(((...))).))).))))))))))))))))))))).))....))))))).............


SIMILARITIES
miRBase gma-MIR172a: 6e-87

PMRD gma-miR172a: 6e-87

microPC miR172: 0.000009		UniProt no hits

RFAM mir-172: 0.0000000002		most similar mature miRNAs

Identical with: gma-MIR172a from miRBase (MNEST040458)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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