ABOUT THIS RECORDspecies: Saccoglossus kowalevskii
miRNA family: mir-10
source: miRBase, original name: sko-mir-10 (MI0010149)
Taxonomy by NCBI:
Saccoglossus kowalevskii Saccoglossus Harrimaniidae Enteropneusta Hemichordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACCCTGTAGATCCGAATTTGTG miRNA* CGAATTCGTTTCTACCGGTGAC mismatches: 3 bulges: 1 |
pre-miRNA
ATATATCTCCACCAACCTCTACCCTGTAGATCCGAATTTGTGGTACGTACATTTTCACGAATTCGTTTCTACCGGTGACAGGTAGCTGCGAGGACACAAC
A
dot-bracket secondary structure
.....((((((.(.((((.((((..(((((..(((((((((((...........)))))))))))..))))).))))..)))).).)).)))).......
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
ATATATCTCCACCAACCTCTACCCTGTAGATCCGAATTTGTGGTACGTACATTTTCACGAATTCGTTTCTACCGGTGACAGGTAGCTGCGAGGACACAAC
A
dot-bracket secondary structure
.....((((((.(.((((.((((..(((((..(((((((((((...........)))))))))))..))))).))))..)))).).)).)))).......
.
SIMILARITIES| miRBase dgr-mir-10: 0.0000003 PMRD no hits microPC no hits | UniProt no hits RFAM mir-10: 0.000005 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
