ABOUT THIS RECORDspecies: Saccoglossus kowalevskii
miRNA family: mir-29
source: miRBase, original name: sko-mir-29b (MI0010151)
Taxonomy by NCBI:
Saccoglossus kowalevskii Saccoglossus Harrimaniidae Enteropneusta Hemichordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCACCATTTGAAATCAGTGT miRNA* CTGATTTCAAACGGTGGATAGA mismatches: 2 bulges: 2 |
pre-miRNA
TGAACTCTCTGACCTTAGGAACCTGATTTCAAACGGTGGATAGATTCCATAGCAACAGTCTAGCACCATTTGAAATCAGTGTTCCTAGTTCAAGAA
dot-bracket secondary structure
.....(((.(((.((.(((((((((((((((((.((((..((((((..........)))))).)))).))))))))))).)))))))).)))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M, Evol Dev. 13:15-27(2011)., "microRNA complements in deuterostomes: origin and evolution of microRNAs"
[2] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
TGAACTCTCTGACCTTAGGAACCTGATTTCAAACGGTGGATAGATTCCATAGCAACAGTCTAGCACCATTTGAAATCAGTGTTCCTAGTTCAAGAA
dot-bracket secondary structure
.....(((.(((.((.(((((((((((((((((.((((..((((((..........)))))).)))).))))))))))).)))))))).)))))).
SIMILARITIES| miRBase dre-mir-29b-1: 0.000000005 PMRD no hits microPC no hits | UniProt no hits RFAM mir-29: 0.00000008 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M, Evol Dev. 13:15-27(2011)., "microRNA complements in deuterostomes: origin and evolution of microRNAs"
[2] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
