ABOUT THIS RECORDspecies: Ixodes scapularis
miRNA family: mir-2
source: miRBase, original name: isc-mir-2b (MI0012277)
Taxonomy by NCBI:
Ixodes scapularis Ixodes Ixodinae Ixodidae Ixodoidea Ixodida Parasitiformes Acari Arachnida Chelicerata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATCACAGCCACCTTTGATGAGC miRNA* CGTCAAAGGGACTGTGAAATG mismatches: 2 bulges: 2 |
pre-miRNA
CCTAATGTTTTCCTGTGCAGCCGTCAAAGGGACTGTGAAATGTCTCCCTTCTTGGTCAGCATATCACAGCCACCTTTGATGAGCTGTACACGAATCGGACT
C
dot-bracket secondary structure
).....((((((.((((((((((((((((((.((((((.((((...((.....))...)))).)))))).).))))))))).)))))))).)))...))).
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
CCTAATGTTTTCCTGTGCAGCCGTCAAAGGGACTGTGAAATGTCTCCCTTCTTGGTCAGCATATCACAGCCACCTTTGATGAGCTGTACACGAATCGGACT
C
dot-bracket secondary structure
).....((((((.((((((((((((((((((.((((((.((((...((.....))...)))).)))))).).))))))))).)))))))).)))...))).
.
SIMILARITIES| miRBase dwi-mir-2a-1: 3.0E-7 PMRD no hits microPC no hits | UniProt no hits RFAM 2mir-2: 5.0E-34 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
