miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Ixodes scapularis
,
Rhipicephalus microplus
,
Rhipicephalus appendiculatus
ABOUT THIS RECORD
ID:
MNEST034967
species:
Ixodes scapularis
miRNA family:
mir-9
source:
miRBase, original name:
isc-mir-79
(
MI0012285
)
Taxonomy by NCBI:
Ixodes scapularis
Ixodes
Ixodinae
Ixodidae
Ixodoidea
Ixodida
Parasitiformes
Acari
Arachnida
Chelicerata
Arthropoda
Panarthropoda
Protostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATAAAGCTAGGTTACCAAAGTTA
miRNA*
TTTTCTTTGGTTATCTAGCTGTATGA
mismatches:
3
bulges:
3
View larger
pre-miRNA
AGAGGATGAAGGCGCTGATA
TTTTCTTTGGTTATCTAGCTGTATGA
GTGATATTAACATC
ATAAAGCTAGGTTACCAAAGTTA
ACAGCACTGCCGTAATG
C
dot-bracket secondary structure
..........(((((((.((
....(((((((.((((((((.(((((
((.......)).))
))).)))))))).))))))).))
.))))...)))......
.
SIMILARITIES
miRBase
dpu-mir-9
:
6e-18
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-9: 7e-27
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ,
Evol Dev. 11:50-68(2009).
,
"The deep evolution of metazoan microRNAs"