ABOUT THIS RECORDspecies: Ixodes scapularis
miRNA family: mir-99
source: miRBase, original name: isc-mir-100 (MI0012263)
Taxonomy by NCBI:
Ixodes scapularis Ixodes Ixodinae Ixodidae Ixodoidea Ixodida Parasitiformes Acari Arachnida Chelicerata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AACCCGTAGATCCGAACTTGTGT miRNA* ACAAGTTCCCCTCTGCGGGTCTG mismatches: 4 bulges: 0 |
pre-miRNA
AAGATCGGAGCGCCCGCCCTAACCCGTAGATCCGAACTTGTGTCCGCGCGATGCAAAGCACAAGTTCCCCTCTGCGGGTCTGGGCTGGTCGCTTGCCATT
C
dot-bracket secondary structure
......((((((((.((((..(((((((((...((((((((((..((.....))...))))))))))...)))))))))..)))).)).))))..))...
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
AAGATCGGAGCGCCCGCCCTAACCCGTAGATCCGAACTTGTGTCCGCGCGATGCAAAGCACAAGTTCCCCTCTGCGGGTCTGGGCTGGTCGCTTGCCATT
C
dot-bracket secondary structure
......((((((((.((((..(((((((((...((((((((((..((.....))...))))))))))...)))))))))..)))).)).))))..))...
.
SIMILARITIES| miRBase ame-mir-100: 0.000001 PMRD no hits microPC no hits | UniProt no hits RFAM mir-10: 8e-36 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
