miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000350
species: Cichorium intybus
miRNA family: MIRf789
source: miRNEST

Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCGGTTCAATAAAGCTGTGG

miRNA*
 ACGGCTTTCTTGAACTGCATG

mismatches: 1
bulges: 0
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pre-miRNA
 AAAATGGTGCTCTTTCTATTCTTCCACGGCTTTCTTGAACTGCATGGGCTTTGATCTATCAGATCTTTGTTTTTATATATAATCTTTGCGGTTCAATAAA
GCTGTGGGAAGATAGAGAAAGGATCAGCA

dot-bracket secondary structure
....((((.((.((((((((.((((((((((((.((((((((((.((((...(((((...)))))...)).............)).)))))))))).)))
))))))))).)))))))).)).))))...


SIMILARITIES
miRBase mtr-MIR396b: 0.0000000004

PMRD lja-miR396: 0.0000000004

microPC miR396: 1e-44		UniProt no hits

RFAM MIR396: 0.000000008		most similar mature miRNAs

Identical with: miR396 from microPC (MNEST046087)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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