ABOUT THIS RECORDspecies: Daphnia pulex
miRNA family: mir-34
source: miRBase, original name: dpu-mir-34 (MI0012244)
Taxonomy by NCBI:
Daphnia pulex Daphnia Daphniidae Anomopoda Cladocera Diplostraca Phyllopoda Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGCAGTGTGGTTAGCTGGTTGTG miRNA* CAGCCACTATCCAAACTGTCCAC mismatches: 3 bulges: 1 |
pre-miRNA
AGGGCAAAAGTGTATTGATGGTTGGCAGTGTGGTTAGCTGGTTGTGAAATATTTACTTGAATCCACAGCCACTATCCAAACTGTCCACTGTCGATGACACG
A
dot-bracket secondary structure
)........(((((((((((((.((((((.(((.(((.((((((((.................))))))))))).))).)))))).))))))))).)))).
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
AGGGCAAAAGTGTATTGATGGTTGGCAGTGTGGTTAGCTGGTTGTGAAATATTTACTTGAATCCACAGCCACTATCCAAACTGTCCACTGTCGATGACACG
A
dot-bracket secondary structure
)........(((((((((((((.((((((.(((.(((.((((((((.................))))))))))).))).)))))).))))))))).)))).
.
SIMILARITIES| miRBase cte-mir-34: 8.0E-8 PMRD no hits microPC no hits | UniProt no hits RFAM 9mir-449: 1.0E-6 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
