ABOUT THIS RECORDspecies: Daphnia pulex
miRNA family: mir-252
source: miRBase, original name: dpu-mir-252a (MI0012228)
Taxonomy by NCBI:
Daphnia pulex Daphnia Daphniidae Anomopoda Cladocera Diplostraca Phyllopoda Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTAAGTACTCGTGCCGCAGGAG miRNA* CCTGCTGCTCAAGTTCTTAACC mismatches: 5 bulges: 0 |
pre-miRNA
AGATGATTCCTACCCCGTTCCTAAGTACTCGTGCCGCAGGAGAGATGTATTAATCTGCAAGTTCCTCCTGCTGCTCAAGTTCTTAACCAATGGGTGGGAG
dot-bracket secondary structure
.......((((((((......((((.(((.(.((.(((((((.((((((......))))...))))))))).)).).))).))))......)))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
AGATGATTCCTACCCCGTTCCTAAGTACTCGTGCCGCAGGAGAGATGTATTAATCTGCAAGTTCCTCCTGCTGCTCAAGTTCTTAACCAATGGGTGGGAG
dot-bracket secondary structure
.......((((((((......((((.(((.(.((.(((((((.((((((......))))...))))))))).)).).))).))))......)))))))).
SIMILARITIES| miRBase aae-mir-252: 0.00002 PMRD no hits microPC no hits | UniProt no hits RFAM mir-252: 0.0003 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
