ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TATTGGCCTGGTTCACTCAGA mismatches: 2 bulges: 0 |
pre-miRNA
AAGACACAAGTATATGAAGTAGTTATTGTGATATTGGCCTGGTTCACTCAGACATGTATACCACGGCACGGTTGTGTCCTTGCTAGAAAGATTTAAAACA
AAATACATGTTGTGATTGTGGTTTTGGGTTTGATTGAGCCGTGCCAATATCTCAGTGCTATTTCATGTTTGCAAATGAT
dot-bracket secondary structure
.........((((((((((((((.((((.(((((((((.(((((((.((((((.((...((((((.((((..(((((..(((.((((....))))...))
).)))))...))))..))))))..)).)))))).))))))).))))))))).))))))))))))))))..)).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
AAGACACAAGTATATGAAGTAGTTATTGTGATATTGGCCTGGTTCACTCAGACATGTATACCACGGCACGGTTGTGTCCTTGCTAGAAAGATTTAAAACA
AAATACATGTTGTGATTGTGGTTTTGGGTTTGATTGAGCCGTGCCAATATCTCAGTGCTATTTCATGTTTGCAAATGAT
dot-bracket secondary structure
.........((((((((((((((.((((.(((((((((.(((((((.((((((.((...((((((.((((..(((((..(((.((((....))))...))
).)))))...))))..))))))..)).)))))).))))))).))))))))).))))))))))))))))..)).......
SIMILARITIES| miRBase mtr-MIR171g: 0.00000000000001 PMRD mtr-miR171g: 0.00000000000001 microPC miR171: 2e-65 | UniProt no hits RFAM MIR171_1: 0.00000000000005 | most similar mature miRNAs |
Identical with: miR171 from microPC (MNEST045683) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
