miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Litopenaeus vannamei, Lepeophtheirus salmonis, Daphnia pulex, Petrolisthes cinctipes, Penaeus monodon, Artemia franciscana, Caligus rogercresseyi, Homarus americanus, Eriocheir sinensis, Carcinus maenas, Lernaeocera branchialis, Caligus clemensi, Daphnia magna, Gammarus pulex, Calanus finmarchicus, Callinectes sapidus, Fenneropenaeus chinensis



ABOUT THIS RECORD

ID: MNEST035021
species: Daphnia pulex
miRNA family: mir-275
source: miRBase, original name: dpu-mir-275 (MI0012232)

Taxonomy by NCBI:
Daphnia pulex Daphnia Daphniidae Anomopoda Cladocera Diplostraca Phyllopoda Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCAGGTACCTGAAGTAGCGCGCG

miRNA*
 CGTGCTGCGACAGGTGCTTCCGGCT

mismatches: 3
bulges: 2
View larger
pre-miRNA
 ATATTACTGGCCACTCCCCGTGCTGCGACAGGTGCTTCCGGCTGTGTTAATAATTGCGAGTCAGGTACCTGAAGTAGCGCGCGGAGTGGCTCGGAACGAT
CTC

dot-bracket secondary structure
......(((((((((((.((((((((..(((((((((..((((.(((........))))))))))))))))..)))))))).)))))))).)))......
...


SIMILARITIES
miRBase bmo-mir-275: 0.000000005

PMRD no hits

microPC no hits		UniProt no hits

RFAM mir-275: 0.00000009

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"



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