ABOUT THIS RECORDspecies: Daphnia pulex
miRNA family: mir-275
source: miRBase, original name: dpu-mir-275 (MI0012232)
Taxonomy by NCBI:
Daphnia pulex Daphnia Daphniidae Anomopoda Cladocera Diplostraca Phyllopoda Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAGGTACCTGAAGTAGCGCGCG miRNA* CGTGCTGCGACAGGTGCTTCCGGCT mismatches: 3 bulges: 2 |
pre-miRNA
ATATTACTGGCCACTCCCCGTGCTGCGACAGGTGCTTCCGGCTGTGTTAATAATTGCGAGTCAGGTACCTGAAGTAGCGCGCGGAGTGGCTCGGAACGAT
CTC
dot-bracket secondary structure
......(((((((((((.((((((((..(((((((((..((((.(((........))))))))))))))))..)))))))).)))))))).)))......
...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
ATATTACTGGCCACTCCCCGTGCTGCGACAGGTGCTTCCGGCTGTGTTAATAATTGCGAGTCAGGTACCTGAAGTAGCGCGCGGAGTGGCTCGGAACGAT
CTC
dot-bracket secondary structure
......(((((((((((.((((((((..(((((((((..((((.(((........))))))))))))))))..)))))))).)))))))).)))......
...
SIMILARITIES| miRBase bmo-mir-275: 0.000000005 PMRD no hits microPC no hits | UniProt no hits RFAM mir-275: 0.00000009 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
