miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Litopenaeus vannamei, Lepeophtheirus salmonis, Daphnia pulex, Petrolisthes cinctipes, Penaeus monodon, Artemia franciscana, Caligus rogercresseyi, Homarus americanus, Eriocheir sinensis, Carcinus maenas, Lernaeocera branchialis, Caligus clemensi, Daphnia magna, Gammarus pulex, Calanus finmarchicus, Callinectes sapidus, Fenneropenaeus chinensis



ABOUT THIS RECORD

ID: MNEST035028
species: Daphnia pulex
miRNA family: mir-29
source: miRBase, original name: dpu-mir-285 (MI0012237)

Taxonomy by NCBI:
Daphnia pulex Daphnia Daphniidae Anomopoda Cladocera Diplostraca Phyllopoda Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAGCACCATTGGAATTCAGTTT

miRNA*
 ACTGAATTCTTTTGATGCCTAGA

mismatches: 5
bulges: 1
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pre-miRNA
 ACAGAGGAGCTGGGATCACTGAATTCTTTTGATGCCTAGATGTAGTTTGTGACTAGAACTCTAGCACCATTGGAATTCAGTTTACCCTGGCTGGCGCAAT
T

dot-bracket secondary structure
.......(((..((...((((((((((..((.(((.(((((.(((((...))))).)..))))))).))..))))))))))....))..)))........
.


SIMILARITIES
miRBase isc-mir-285: 0.0003

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"



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