ABOUT THIS RECORDspecies: Acyrthosiphon pisum
miRNA family: let-7
source: miRBase, original name: api-let-7 (MI0013908)
Taxonomy by NCBI:
Acyrthosiphon pisum Acyrthosiphon Macrosiphini Aphidinae Aphididae Aphidoidea Aphidomorpha Aphidiformes Sternorrhyncha Hemiptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGGTAGTTGGTTGTATAGT miRNA* TATACAATCGGCTAACTTTACT mismatches: 0 bulges: 1 |
pre-miRNA
TGAGGTAGTTGGTTGTATAGTAGTTTATTATTTGACTTTACTATACAATCGGCTAACTTTACT
dot-bracket secondary structure
(((((((((((((((((((((((((........))))..))))))))))))))).))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S, BMC Genomics. 11:281(2010)., "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum"
TGAGGTAGTTGGTTGTATAGTAGTTTATTATTTGACTTTACTATACAATCGGCTAACTTTACT
dot-bracket secondary structure
(((((((((((((((((((((((((........))))..))))))))))))))).))))))..
SIMILARITIES| miRBase aae-let-7: 0.0000007 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 6e-29 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S, BMC Genomics. 11:281(2010)., "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum"
