ABOUT THIS RECORDspecies: Acyrthosiphon pisum
source: miRBase, original name: api-mir-3049 (MI0014007)
Taxonomy by NCBI:
Acyrthosiphon pisum Acyrthosiphon Macrosiphini Aphidinae Aphididae Aphidoidea Aphidomorpha Aphidiformes Sternorrhyncha Hemiptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGGAAGGCAGCTGCGGCGGACT miRNA* TCCGTCCAACTCCTTTCCGTTT mismatches: 2 bulges: 2 |
pre-miRNA
TCGGGAAGGCAGCTGCGGCGGACTGTGCAGGTTCGTGCCCAACATTCCAGTCCGTCCAACTCCTTTCCGTTT
dot-bracket secondary structure
.((((((((.((.((.(((((((((((..(((....)))...))...))))))))))).))))))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S, BMC Genomics. 11:281(2010)., "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum"
TCGGGAAGGCAGCTGCGGCGGACTGTGCAGGTTCGTGCCCAACATTCCAGTCCGTCCAACTCCTTTCCGTTT
dot-bracket secondary structure
.((((((((.((.((.(((((((((((..(((....)))...))...))))))))))).))))))))))...
SIMILARITIES| miRBase ame-mir-3049: 0.00001 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S, BMC Genomics. 11:281(2010)., "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum"
