miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Bicyclus anynana, Drosophila melanogaster, Bombyx mori, Aedes aegypti, Acyrthosiphon pisum, Culex quinquefasciatus, Anopheles gambiae, Dendroctonus ponderosae, Nasonia vitripennis, Drosophila simulans, Aphis gossypii, Glossina morsitans morsitans, Choristoneura fumiferana, Spodoptera frugiperda, Heliothis virescens, Locusta migratoria, Phlebotomus papatasi, Drosophila sechellia, Drosophila auraria, Nilaparvata lugens, Antheraea assama, Drosophila pseudoobscura, Teleopsis dalmanni, Lutzomyia longipalpis, Nasonia giraulti, Bombus terrestris, Myzus persicae, Drosophila willistoni, Drosophila ananassae, Solenopsis invicta, Drosophila virilis, Drosophila erecta, Drosophila grimshawi, Ceratitis capitata, Spodoptera littoralis, Peregrinus maidis, Samia cynthia ricini, Drosophila mojavensis, Danaus plexippus, Cochliomyia hominivorax, Anopheles stephensi, Diabrotica virgifera virgifera, Haematobia irritans irritans, Papilio xuthus, Rhodnius prolixus, Polypedilum vanderplanki, Ostrinia nubilalis, Laupala kohalensis, Frankliniella occidentalis, Trichoplusia ni, Gryllus bimaculatus, Drosophila yakuba, Epiphyas postvittana, Apis mellifera, Tribolium castaneum

ABOUT THIS RECORD

ID: MNEST035162
species: Acyrthosiphon pisum
miRNA family: mir-iab-4
source: miRBase, original name: api-mir-iab-4 (MI0013355)

Taxonomy by NCBI:
Acyrthosiphon pisum Acyrthosiphon Macrosiphini Aphidinae Aphididae Aphidoidea Aphidomorpha Aphidiformes Sternorrhyncha Hemiptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
ACGTATACTAAATGTATCCTGA

miRNA*
GGTATACCTTCAGTATACGTAA

mismatches: 4
bulges: 0

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pre-miRNA
CCCTGTACGTATACTAAATGTATCCTGAGTGCATTATAAAACTGTCCGGTATACCTTCAGTATACGTAACAGG

dot-bracket secondary structure
.((((((((((((((.((.((((.(((.(.(((.........))))))).)))).)).))))))))).)))))

SIMILARITIES

miRBase ame-mir-iab-4: 6e-17

PMRD no hits

microPC no hits

UniProt no hits

RFAM mir-iab-4: 8e-35

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Sathyamurthy G, Swamy NR, J. Comp. Intell. Bioinf. 2:109-119(2009)., "Computational Identification of MicroRNA Homologs from Acyrthosiphon pisum (Pea Aphid)"