ABOUT THIS RECORDspecies: Aedes aegypti
miRNA family: let-7
source: miRBase, original name: aae-let-7 (MI0013505)
Taxonomy by NCBI:
Aedes aegypti Stegomyia Aedes Aedes/Ochlerotatus group Culicini Culicinae Culicidae Culicoidea Culicimorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGGTAGTTGGTTGTATAGT miRNA* TATGCAATCTGCTAGCTTGTC mismatches: 2 bulges: 0 |
pre-miRNA
CACGTTGAGGTAGTTGGTTGTATAGTAGTGACTGATTAAATATCTGCTATGCAATCTGCTAGCTTGTCGTG
dot-bracket secondary structure
((((.((((.((((.(((((((((((((...............))))))))))))).)))).)))).))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Li S, Mead EA, Liang S, Tu Z, BMC Genomics. 10:581(2009)., "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs"
CACGTTGAGGTAGTTGGTTGTATAGTAGTGACTGATTAAATATCTGCTATGCAATCTGCTAGCTTGTCGTG
dot-bracket secondary structure
((((.((((.((((.(((((((((((((...............))))))))))))).)))).)))).))))
SIMILARITIES| miRBase cqu-let-7: 0.0000000008 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 1e-33 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Li S, Mead EA, Liang S, Tu Z, BMC Genomics. 10:581(2009)., "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs"
