miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Bicyclus anynana, Drosophila melanogaster, Bombyx mori, Aedes aegypti, Culex quinquefasciatus, Anopheles gambiae, Dendroctonus ponderosae, Nasonia vitripennis, Drosophila simulans, Glossina morsitans morsitans, Choristoneura fumiferana, Spodoptera frugiperda, Heliothis virescens, Phlebotomus papatasi, Drosophila sechellia, Drosophila auraria, Antheraea assama, Drosophila pseudoobscura, Teleopsis dalmanni, Lutzomyia longipalpis, Nasonia giraulti, Bombus terrestris, Drosophila willistoni, Drosophila ananassae, Solenopsis invicta, Drosophila virilis, Drosophila erecta, Drosophila grimshawi, Ceratitis capitata, Spodoptera littoralis, Samia cynthia ricini, Drosophila mojavensis, Danaus plexippus, Cochliomyia hominivorax, Anopheles stephensi, Diabrotica virgifera virgifera, Haematobia irritans irritans, Papilio xuthus, Polypedilum vanderplanki, Ostrinia nubilalis, Trichoplusia ni, Drosophila yakuba, Epiphyas postvittana, Apis mellifera, Tribolium castaneum



ABOUT THIS RECORD

ID: MNEST035166
species: Aedes aegypti
miRNA family: mir-1
source: miRBase, original name: aae-mir-1 (MI0013455)

Taxonomy by NCBI:
Aedes aegypti Stegomyia Aedes Aedes/Ochlerotatus group Culicini Culicinae Culicidae Culicoidea Culicimorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGAATGTAAAGAAGTATGGAG

miRNA*
 CCATGCTTCCTTGCATTCAATA

mismatches: 2
bulges: 0
View larger
pre-miRNA
 CGAAAGTTCCATGCTTCCTTGCATTCAATAGTGATTCTGAAAGCATATGGAATGTAAAGAAGTATGGAGCGCTCGG

dot-bracket secondary structure
(((..((((((((((((.((((((((.(((((..........)).))).)))))))).))))))))))))..))).


SIMILARITIES
miRBase cqu-mir-1: 4e-24

PMRD no hits

microPC no hits		UniProt no hits

RFAM mir-1: 1e-36

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa

references
[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
[2] Li S, Mead EA, Liang S, Tu Z, BMC Genomics. 10:581(2009)., "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs"



Liczniki na strone;