miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cichorium intybus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Taraxacum kok-saghyz, Taraxacum officinale, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST000352
species: Cichorium intybus
miRNA family: MIRf493
source: miRNEST

Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GATCTCGGACCAGGCTTCATT

miRNA*
 TGAAGTTTGATCCAAGATCCT

mismatches: 2
bulges: 0
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pre-miRNA
 TGGAGTTGTTTGGAATGAAGTTTGATCCAAGATCCTTTTTGCATGTGTGTTTTTTAGGGATCTCGGACCAGGCTTCATTCTTGACAATTGT

dot-bracket secondary structure
...(((((((.(((((((((((((.(((.((((((((...(((....))).....)))))))).))).))))))))))))).)))))))..


SIMILARITIES
miRBase ptc-MIR166o: 0.00000000007

PMRD ptc-miR166o: 0.00000000007

microPC miR166: 0.000001		UniProt no hits

RFAM mir-166: 0.000000001		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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